Category Archives: Development

Biopython 1.61 released

Posted on February 5, 2013 by Peter

Source distributions and Windows installers for Biopython 1.61 are now available from the downloads page on the Biopython website and from the Python Package Index (PyPI). The updated Biopython Tutorial and Cookbook is online (PDF). Platforms/Deployment We currently support Python … Continue reading →

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BioRuby 1.4.3 released

Posted on August 21, 2012 by Naohisa Goto

We are pleased to announce the release of BioRuby 1.4.3. This new release fixes bugs existed in 1.4.2 and improves portability on JRuby and Rubinius. Here is a brief summary of changes. Bio::KEGG::KGML bug fixes and new class Bio::KEGG::KGML::Graphics for … Continue reading →

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Travis-CI for Testing

Posted on July 30, 2012 by Peter

BioRuby, Biopython and BioPerl are now using Travis-CI.org, a hosted continuous integration service for the open source community, to run their unit tests automatically whenever their GitHub repositories are updated. Continue reading →

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Biopython 1.60 released

Posted on June 25, 2012 by Peter

Source distributions and Windows installers for Biopython 1.60 are now available from the downloads page on the Biopython website and from the Python Package Index (PyPI). Platforms/Deployment We currently support Python 2.5, 2.6 and 2.7 and also test under Jython … Continue reading →

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BioJava 3.0.4 released

Posted on May 23, 2012 by andreas

BioJava 3.0.4 has been released and is available from http://www.biojava.org/wiki/BioJava:Download as well as from the BioJava maven repository at http://www.biojava.org/download/maven/ . – This is mainly a bug fix release addressing issues with the protein structure and disorder modules – One … Continue reading →

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Students selected for GSoC

Posted on April 24, 2012 by Peter

Hello all, I’m very pleased and excited to announce that the Open Bioinformatics Foundation has selected 5 very capable students to work on OBF projects this summer as part of the Google Summer of Code (GSoC) program. The accepted students, … Continue reading →

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Announcing OBF Summer of Code 2012

Posted on March 25, 2012 by Peter

Applications due 19:00 UTC, April 6, 2012. http://www.open-bio.org/wiki/Google_Summer_of_Code The Open Bioinformatics Foundation (OBF) Summer of Code program provides a unique opportunity for undergraduate, masters, and PhD students to obtain hands-on experience writing and extending open-source software for bioinformatics under the … Continue reading →

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OBF accepted for GSoC 2012

Posted on March 16, 2012 by Peter

Google announced today that the Open Bioinformatics Foundation (OBF) has been accepted as a mentoring organization for Google Summer of Code 2012! Continue reading →

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Cross-links in GenomeDiagram

Posted on March 2, 2012 by Peter

I’ve just finished writing up an example for the Biopython Tutorial of the new GenomeDiagram functionality added in Biopython 1.59. You can now control the start and end points of individual tracks, and you can add cross-links between regions of … Continue reading →

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Biopython 1.59 released

Posted on February 24, 2012 by Peter

Source distributions and Windows installers for Biopython 1.59 are now available from the downloads page on the Biopython website and from the Python Package Index (PyPI). Continue reading →

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