Category Archives: Code

Biopython 1.64 released

Source distributions and Windows installers for Biopython 1.64 are now available from the downloads page on the official Biopython website and from the Python Package Index (PyPI). This release of Biopython supports Python 2.6 and 2.7, 3.3 and also the new 3.4 version. It is also tested on PyPy 2.0 … Continue reading

Posted in Biopython, Code, Community, Development, OBF Projects | Tagged , , , , , | 18 Comments

OBF Google Summer of Code students 2014

I’m pleased to announce the acceptance of OBF’s Google Summer of Code 2014 (GSoC) students. Continue reading

Posted in Biopython, Blogroll, Code, Community, Development, Google Summer of Code, OBF, OBF Projects | Tagged , , , , , | 9 Comments

Catering at BOSC CodeFest 2014

Bioinformatics Open Source Codefest, July 9 and 10th in Boston, now with sponsored food and drinks! Continue reading

Posted in Blogroll, BOSC/ISMB, Code, Community, Development, General, OBF, OBF Projects | Tagged , , , , , , , , , | 4 Comments

OBF accepted as a mentoring organization for Google Summer of Code 2014

Open Bio is officially a mentoring organization for Google Summer of Code 2014! See Google’s official announcement for more details on what this means in general. What’s next? Google’s GSoC timeline lays out what we need to do as a … Continue reading

Posted in Code, Community, Development, Google Summer of Code, OBF | 4 Comments

OBF applies for Google Summer of Code 2014

On Friday, OBF applied to be a mentoring organization for Google Summer of Code 2014. The core of our application to Google is our list of project ideas and our team of mentors supporting them. (We also have a separate … Continue reading

Posted in Code, Community, Development, Google Summer of Code, OBF | 8 Comments

Call for Ideas for OBF’s 2014 Google Summer of Code

Google Summer of Code is on again for 2014, and OBF is once again applying as a mentoring organization. Participating in GSoC as an organization is very competitive, and we will need your help in gathering a good set of … Continue reading

Posted in Code, Community, Development, Google Summer of Code, OBF | 7 Comments

BioPerl release 1.6.923

The latest BioPerl release (v1.6.923) is now available on CPAN. This is a point release to address a few bugs, as well as push out the recent code updates that Francisco Ossandón has made to improve Windows support and improve … Continue reading

Posted in BioPerl, Code, Community | 5 Comments

Biopython 1.63 released

Source distributions and Windows installers for Biopython 1.63 are now available from the downloads page on the official Biopython website and (soon) from the Python Package Index (PyPI). The current version removed the requirement of the 2to3 library. This was made possible by dropping Python 2.5 (and Jython 2.5). This … Continue reading

Posted in Biopython, Code, Community, Development, OBF Projects | Tagged , , , , , | 22 Comments

Biopython 1.63 beta released

Source distributions and Windows installers for Biopython 1.63 beta are now available from the downloads page on the official Biopython website. This is a beta release for testing purposes, the main reason for a beta version is the large amount of changes imposed by the … Continue reading

Posted in Biopython, Code, Community, Development, OBF, OBF Projects | Tagged , , , , , | 15 Comments

BioPerl v.1.6.910 released

UPDATE: As a bit of time has passed since we originally intended to make a new release, I forgot that (in that time period) Carnë Draug had released a split-out version of Bio::Biblio to CPAN this past March. Unfortunately that … Continue reading

Posted in BioPerl, Code, Development, OBF Projects | 10 Comments