Category Archives: Code

Biopython 1.63 released

Source distributions and Windows installers for Biopython 1.63 are now available from the downloads page on the official Biopython website and (soon) from the Python Package Index (PyPI). The current version removed the requirement of the 2to3 library. This was made possible by dropping Python 2.5 (and Jython 2.5). This … Continue reading

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Biopython 1.63 beta released

Source distributions and Windows installers for Biopython 1.63 beta are now available from the downloads page on the official Biopython website. This is a beta release for testing purposes, the main reason for a beta version is the large amount of changes imposed by the … Continue reading

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BioPerl v.1.6.910 released

UPDATE: As a bit of time has passed since we originally intended to make a new release, I forgot that (in that time period) Carnë Draug had released a split-out version of Bio::Biblio to CPAN this past March. Unfortunately that … Continue reading

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Biopython 1.62 released

Source distributions and Windows installers for Biopython 1.62 are now available from the downloads page on the official Biopython website and from the Python Package Index (PyPI). Continue reading

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BioRuby 1.4.3.0001 Released

We are pleased to announce the release of BioRuby 1.4.3.0001. This new release fixes the following bugs. “gem install bio” failed with Ruby 2.0 or later versions. lib/bio/db/gff.rb script encoding issue Bio::Blast::Default::Report parse error when subject sequence contains spaces. For … Continue reading

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Biopython 1.61 released

Source distributions and Windows installers for Biopython 1.61 are now available from the downloads page on the Biopython website and from the Python Package Index (PyPI). The updated Biopython Tutorial and Cookbook is online (PDF). Platforms/Deployment We currently support Python … Continue reading

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BioRuby 1.4.3 released

We are pleased to announce the release of BioRuby 1.4.3. This new release fixes bugs existed in 1.4.2 and improves portability on JRuby and Rubinius. Here is a brief summary of changes. Bio::KEGG::KGML bug fixes and new class Bio::KEGG::KGML::Graphics for … Continue reading

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