Category Archives: OBF Projects

Open Bioinformatics Projects

BioRuby 1.5.0 released

We are pleased to announce the release of BioRuby 1.5.0. This new release includes support of recent Ruby versions (Ruby 2.0.0, 2.1 and 2.2),  improvement of codes, and bug fixes. Here is a brief summary of changes. Ruby 2.0.0, 2.1, … Continue reading

Posted in BioRuby, Code, Development, OBF, OBF Projects | Tagged | Leave a comment

GSoC project Sambamba published in scientific journal

(This is a repost of a BLOG on Google Open Source news about Google’s open source student programs and software releases) One of our goals with GSoC is to inspire young developers to participate in open source development, hopefully continuing … Continue reading

Posted in BioRuby, Google Summer of Code, OBF | Tagged , | Leave a comment

Sadly OBF not accepted for GSoC 2015

Last year’s Google Summer of Code 2014 was very productive for the OBF with six students working on Bio* and related bioinformatics projects. We applied to be part of GSoC 2015, but unfortunately this year were not accepted. Continue reading

Posted in BioJava, BioLib, BioPerl, Biopython, BioRuby, Blogroll, Community, Development, General, Google Summer of Code, OBF, OBF Projects | Tagged , , , , | Leave a comment

OBF Google Summer of Code 2014 Wrap-up

In 2014, OBF had six students in the Google Summer of Code 2014™ (GSoC) program mentored under its umbrella of Bio* and related open-source bioinformatics community projects: Loris Cro (Bioruby) with mentors Francesco Strozzi and Raoul Bonnal; Evan Parker (Biopython) … Continue reading

Posted in Biopython, BioRuby, Community, Google Summer of Code, OBF | Tagged , , , , | 8 Comments

Biopython 1.65 released

Source distributions and Windows installers for Biopython 1.65 are now available. The most visible change is that the Biopython sequence objects now use string comparison, rather than Python’s object comparison. Continue reading

Posted in Biopython, Blogroll, Code, Development, OBF, OBF Projects | Tagged , , , | 2 Comments

Biopython 1.64 released

Source distributions and Windows installers for Biopython 1.64 are now available from the downloads page on the official Biopython website and from the Python Package Index (PyPI). This release of Biopython supports Python 2.6 and 2.7, 3.3 and also the new 3.4 version. It is also tested on PyPy 2.0 … Continue reading

Posted in Biopython, Code, Community, Development, OBF Projects | Tagged , , , , , | 18 Comments

OBF Google Summer of Code students 2014

I’m pleased to announce the acceptance of OBF’s Google Summer of Code 2014 (GSoC) students. Continue reading

Posted in Biopython, Blogroll, Code, Community, Development, Google Summer of Code, OBF, OBF Projects | Tagged , , , , , | 9 Comments