Category Archives: BioJava

O|B|F in Google Summer of Code

O|B|F is in Google Summer of Code, student applications due to Google April 9, 2010. Continue reading

Posted in BioDAS, BioJava, BioLib, BioMOBY, BioPerl, Biopython, BioRuby, Blipkit, Community, Google Summer of Code, OBDA / BioSQL, OBF, OBF Projects | Tagged , , | Leave a comment

Sanger FASTQ format and the Solexa/Illumina variants

I’m delighted to announce an open access publication in Nucleic Acids Research describing the FASTQ file format based on the conventions agreed by the OBF projects: The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ … Continue reading

Posted in BioJava, BioPerl, Biopython, BioRuby, Blogroll, Community, Development, Documentation, General, OBF, OBF Projects | Tagged , , , , , | Leave a comment

Server downtime announcement

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‘biojava in anger’ translated to French and Japanese

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Montreal BioJava Bootcamp Announced

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BioJava 1.3 Released

Highlights of this release include:

– Packed storage of sequence data in memory

– Better support for the OBDA database access standards

– Improvements to the parsers for output from tools like
blast and fasta.

– Many enhancements to the FeatureFilter system.
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Chromatogram viewing with Java

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