Category Archives: BioJava

Sanger FASTQ format and the Solexa/Illumina variants

I’m delighted to announce an open access publication in Nucleic Acids Research describing the FASTQ file format based on the conventions agreed by the OBF projects: The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ … Continue reading

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Server downtime announcement

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Posted in BioDAS, BioJava, BioMOBY, BioPerl, Biopython, General, OBDA / BioSQL | Comments Off

‘biojava in anger’ translated to French and Japanese

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Montreal BioJava Bootcamp Announced

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BioJava 1.3 Released

Highlights of this release include:

- Packed storage of sequence data in memory

- Better support for the OBDA database access standards

- Improvements to the parsers for output from tools like
blast and fasta.

- Many enhancements to the FeatureFilter system.
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Chromatogram viewing with Java

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The Open Biological Database Access (OBDA) introduction for BioPerl

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