Archive for the ‘BioPerl’ Category
Thursday, February 26th, 2009
All,
I am proud to announce that the 1.6 release for BioPerl-run, BioPerl-
db, and BioPerl-network are now available by direct download and via
CPAN. These are designated as 1.006000, with a requirement for
BioPerl 1.6 and higher (1.006000).
FIXED:
1) Bio::Tools::Run::Primer3 now accepts primer3 or primer3_core as
executable ...
Posted in BioPerl, Code, Development, Documentation | No Comments »
Sunday, January 25th, 2009
Release Pumpkin Chris Fields has announced the release of BioPerl 1.6 - the first stable release in a several years containing many significant improvements and bug fixes.
I am proud to announce, on behalf of the BioPerl core developers, that BioPerl 1.6.0 is now available. This is the first BioPerl core ...
Posted in BioPerl, Code, Development | No Comments »
Friday, January 23rd, 2009
RC4 is up, we are days away from final release...
Posted in BioPerl, Code, Development | No Comments »
Friday, December 26th, 2008
BioPerl has branched for 1.6 and the RC1 is up for testing as Chris announced.
Posted in BioPerl, Development | No Comments »
Tuesday, December 9th, 2008
BioPerl is preparing for version 1.6 release in the coming months. As part of this some restructuring and simplification of the packaging is occurring.
Bio-Graphics has been split off into its own package back on Sourceforge to allow for a separate release schedule. It will be uploaded to CPAN as a separate ...
Posted in BioPerl, Development | No Comments »
Wednesday, December 6th, 2006
I'm proud to announce the final release of Bioperl 1.5.2. Full details are available at http://www.bioperl.org/wiki/Release_1.5.2
Posted in BioPerl | No Comments »
Wednesday, January 25th, 2006
I am pleased to announce the release of a new website for BioPerl. The site is based on the mediawiki software that was developed for the wikipedia project. We intend the site to be a place for community input on documentation and design for the ...
Posted in BioPerl | Comments Off
Thursday, October 13th, 2005
I am pleased to announce the 1.5.1 developer release of Bioperl.
Essential links here
Core
http://bioperl.org/DIST/bioperl-1.5.1.tar.gz
http://bioperl.org/DIST/bioperl-1.5.1.zip
http://bioperl.org/DIST/bioperl-1.5.1.tar.bz2
Run
http://bioperl.org/DIST/bioperl-run-1.5.1.tar.gz
http://bioperl.org/DIST/bioperl-run-1.5.1.zip
http://bioperl.org/DIST/bioperl-run-1.5.1.tar.bz2
Ext
http://bioperl.org/DIST/bioperl-ext-1.5.1.tar.gz
http://bioperl.org/DIST/bioperl-ext-1.5.1.zip
http://bioperl.org/DIST/bioperl-ext-1.5.1.tar.bz2
MD5 sum
http://bioperl.org/DIST/SIGNATURES.md5
Please see my mailing list postfor more information.
Posted in BioPerl | Comments Off
Saturday, October 8th, 2005
Release Candidate 4 for bioperl 1.5.1 (Developer release) core, run, and ext packages is available.
Several bug fixes went in last week so I've made what I hope to be
the last release candidate before 1.5.1 goes out.
More Info:
http://portal.open-bio.org/pipermail/bioperl-l/2005-October/019904.html
Posted in BioPerl | Comments Off
Thursday, March 17th, 2005
A PopGen HOWTO added to the website for using the population genetics modules in Bioperl.
The PAML HOWTO is in-process of being updated to describe the new functionalilty.
Posted in BioPerl | Comments Off