Archive for the ‘Code’ Category
Friday, February 13th, 2009
Google is committed to run the Summer of Code program again this year. It will be for the 5th time.
In broad strokes, the program funds what you might call remote summer internships for students to contribute to an open-source software project. Projects (or umbrella organizations) wishing to participate in the program ...
Posted in Code, Community, Development, General, OBF, OBF Projects | No Comments »
Sunday, January 25th, 2009
Release Pumpkin Chris Fields has announced the release of BioPerl 1.6 - the first stable release in a several years containing many significant improvements and bug fixes.
I am proud to announce, on behalf of the BioPerl core developers, that BioPerl 1.6.0 is now available. This is the first BioPerl core ...
Posted in BioPerl, Code, Development | No Comments »
Friday, January 23rd, 2009
RC4 is up, we are days away from final release...
Posted in BioPerl, Code, Development | No Comments »
Wednesday, December 6th, 2006
I'm proud to announce the final release of Bioperl 1.5.2. Full details are available at http://www.bioperl.org/wiki/Release_1.5.2
Posted in Code | No Comments »
Monday, November 27th, 2006
Sendu has posted 1.5.2 RC5. There may be a few more kinks to work out, so try this release and report if there are problems with the tests.
Posted in Code | No Comments »
Thursday, November 9th, 2006
Sendu has announced that Release Candidate 3 is available for download and testing. This may be the last RC before the 1.5.2 release so give it a whirl and speak up with any problems or concerns.
Posted in Code | No Comments »
Thursday, November 9th, 2006
Bioperl wiki is now running Mediawiki 1.8.2.
nothing too different under the hood at this point, the mediawiki people probably have more to say in the release-notes.
Posted in Code | No Comments »
Thursday, August 10th, 2006
We are currently planning a timetable for the next few Bioperl releases, including the next developer release (v1.5.2), the next stable release (1.6) and beyond. Users are welcome to add requests (within reason!), donate code, etc. Lots of changes in store!
The release schedule can be found here. ...
Posted in Code | No Comments »
Thursday, May 18th, 2006
We are announcing a new Sourceforge Project called Modware. It is an object-oriented API written in Perl that creates BioPerl object representations of biological features stored in a Chado database. It basically creates a Bio::Seq object for chromosomes in Chado and creates Bio::SeqFeature::Gene objects for protein coding transcripts stored in ...
Posted in Code | No Comments »
Sunday, May 14th, 2006
I'm glad to announce the availability of the Deobfuscator interface at the BioPerl website. You can use it at the following URL:
http://bioperl.org/cgi-bin/deob_interface.cgi
Many thanks to Laura Kavanaugh and David Messina for this great contribution to the BioPerl project!
Posted in Code, Development, Documentation | No Comments »