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Category Archives: BioPerl
BioPerl interview in latest FLOSS Weekly
Two of the core BioPerl developers, Jason Stajich and Chris Fields, were interviewed by FLOSS Weekly. The interview is now available as an MP3 on the FLOSS Weekly website; several streaming versions (including podcast) are also available.
Posted in BioPerl, BOSC/ISMB, Code, Community, Development, General, OBF, OBF Projects
Tagged BioPerl
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BioPerl core 1.6.1 PPM available
BioPerl 1.6.1 is now available for ActivePerl as a PPM, instructions for downloading can be found on the BioPerl wiki. This has been tested only for ActivePerl 5.10 and above, so any feedback with older versions of BioPerl would be … Continue reading
First 1.6.1 alphas of BioPerl-Run, BioPerl-DB, BioPerl-Network
Running a bit late on this, so just a quick note that the first alphas for BioPerl-Run, BioPerl-DB, and BioPerl-Network have been uploaded to CPAN: BioPerl-Run BioPerl-DB BioPerl-Network They can also be downloaded from the BioPerl website: http://bioperl.org/DIST/RC/ This is … Continue reading
BioPerl 1.6.1 released
We are pleased to announce the immediate availability of BioPerl 1.6.1, the latest release of BioPerl’s core code. You can grab it here: Via CPAN: http://search.cpan.org/~cjfields/BioPerl-1.6.1/ Via the BioPerl website: http://bioperl.org/DIST/BioPerl-1.6.1.tar.bz2 http://bioperl.org/DIST/BioPerl-1.6.1.tar.gz http://bioperl.org/DIST/BioPerl-1.6.1.zip The PPM for Windows should also finally … Continue reading
Posted in BioPerl, Community, Development, Documentation, General, OBF, OBF Projects
Tagged BioPerl, FASTQ
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Release 1.6 of BioPerl-run, BioPerl-db, BioPerl-network
All, I am proud to announce that the 1.6 release for BioPerl-run, BioPerl- db, and BioPerl-network are now available by direct download and via CPAN. These are designated as 1.006000, with a requirement for BioPerl 1.6 and higher (1.006000). FIXED: … Continue reading
BioPerl 1.6 released
Release Pumpkin Chris Fields has announced the release of BioPerl 1.6 – the first stable release in a several years containing many significant improvements and bug fixes. I am proud to announce, on behalf of the BioPerl core developers, that … Continue reading
BioPerl 1.6 RC4
RC4 is up, we are days away from final release…
BioPerl branched for 1.6, RC1 is up
BioPerl has branched for 1.6 and the RC1 is up for testing as Chris announced.
BioPerl 1.6 preparations
BioPerl is preparing for version 1.6 release in the coming months. As part of this some restructuring and simplification of the packaging is occurring. Continue reading