Slides of Bioperl-db / BioSQL talk at BOSC03
Sunday, September 21st, 2003I posted the slides for the Bioperl-db/BioSQL talk I gave at BOSC03. -hilmar
Archive for the ‘BioPerl’ Category
I posted the slides for the Bioperl-db/BioSQL talk I gave at BOSC03. -hilmar
Release Announcement: Bioperl-Microarray 0.1
Friday, September 19th, 2003The Bioperl developers are pleased to announce a 0.1 release of bioperl-microarray, a Bioperl extension package dedicated to manipulation of microarray data. The package is implemented using IO conventions Bioperl developers should already be familiar with. Data types currently supported are: Affymetrix GeneChip CEL files (read and write) Affymetrix GeneChip CDF files (read) Affymetrix ...
Bioperl 1.2.3 Released
Thursday, September 18th, 2003Bioperl 1.2.3 On behalf of the Bioperl developers, we are pleased to announce the release of Bioperl 1.2.3. This is the set of Core libraries which constitutes Bioperl and covers areas like Sequence file parsing, Sequence Feature representations, Database access to flatfile web-based sequence databases, Alignment parsing and manipulation, parsing ...
Server downtime announcement
Saturday, August 30th, 2003Hi Everyone, Apologies for the mass cross-posting but this email is about server and IP changes that will affect all of our projects and servers. Simply put -- Wyeth, the company that provides us with our hosting and wonderful T3 connection to the internet is cutting their internet connection circuits over from ...
Recent BioPerl additions and bug fixes
Thursday, August 14th, 2003Jason has summarized a significant amount of work he has done on the CVS tree. Major work done on Bio::PopGen, Bio::Matrix and bug fixes to Bio::Tree and Bio::SeqIO. All the juicy details can be read in his bioperl posting archived here: http://bioperl.org/pipermail/bioperl-l/2003-August/013168.html
new restriction analysis classes
Tuesday, July 15th, 2003Rob Edwards and Heikki Lehvaslaiho have been writing new restriction analysis classes. These will eventually replace the long serving Bio::Tools::RestrictionEnzyme by Steve Chervitz. The first working versions are in CVS. A UML graph shows the class relationships. A more verbose overview is below.
Bioperl 1.2.2 released
Tuesday, July 8th, 2003This is a bug fix release from the stable branch. The Bioperl release 1.2.2 is available at http://www.bioperl.org/DIST/bioperl-1.2.2.tar.gz and is propagating around CPAN now. Bioperl-run is a collection of modules that wrap bioinformatics applications to allow running them from bioperl. The release cycle of bioperl-run follows the core. The latest bioperl-run release is therefore at: http://www.bioperl.org/DIST/bioperl-run-1.2.2.tar.gz
BOSC’2003 Pictures are online
Wednesday, July 2nd, 2003Our "Bioinformatics Open Source Conference" was held in Brisbane, Australia in conjunction with the larger ISMB'2003 meeting. It was quite successful --- 96 attendees, wireless internet, BOF rooms and 30+ presentations over 2 days. Pictures are online here: http://gallery.open-bio.org/
Release candidate 1.2.2 available
Wednesday, July 2nd, 2003A possible release candidate for BioPerl 1.2.2 is now available for download: http://bioperl.org/DIST/bioperl-1.2.2rc1.tar.gz Please download and give it a test. New aditions, features and fixes are in the "Changes" file.
BioPerl workshop materials online
Friday, June 27th, 2003Heikki has converted some Bioperl workshop materials to a web slide show that is available here: http://www.ebi.ac.uk/~lehvasla/bioperl/