Category Archives: Biopython

The Biopython Project is an international distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world.

Sadly OBF not accepted for GSoC 2015

Last year’s Google Summer of Code 2014 was very productive for the OBF with six students working on Bio* and related bioinformatics projects. We applied to be part of GSoC 2015, but unfortunately this year were not accepted. Continue reading

Posted in BioJava, BioLib, BioPerl, Biopython, BioRuby, Blogroll, Community, Development, General, Google Summer of Code, OBF, OBF Projects | Tagged , , , , | Leave a comment

OBF Google Summer of Code 2014 Wrap-up

In 2014, OBF had six students in the Google Summer of Code 2014™ (GSoC) program mentored under its umbrella of Bio* and related open-source bioinformatics community projects: Loris Cro (Bioruby) with mentors Francesco Strozzi and Raoul Bonnal; Evan Parker (Biopython) … Continue reading

Posted in Biopython, BioRuby, Community, Google Summer of Code, OBF | Tagged , , , , | 8 Comments

Biopython 1.65 released

Source distributions and Windows installers for Biopython 1.65 are now available. The most visible change is that the Biopython sequence objects now use string comparison, rather than Python’s object comparison. Continue reading

Posted in Biopython, Blogroll, Code, Development, OBF, OBF Projects | Tagged , , , | 2 Comments

Biopython 1.64 released

Source distributions and Windows installers for Biopython 1.64 are now available from the downloads page on the official Biopython website and from the Python Package Index (PyPI). This release of Biopython supports Python 2.6 and 2.7, 3.3 and also the new 3.4 version. It is also tested on PyPy 2.0 … Continue reading

Posted in Biopython, Code, Community, Development, OBF Projects | Tagged , , , , , | 18 Comments

OBF Google Summer of Code students 2014

I’m pleased to announce the acceptance of OBF’s Google Summer of Code 2014 (GSoC) students. Continue reading

Posted in Biopython, Blogroll, Code, Community, Development, Google Summer of Code, OBF, OBF Projects | Tagged , , , , , | 9 Comments

Call for Organization Admins for OBF’s 2014 Google Summer of Code participation

Update: The deadline for responding has been extended to January 25. The 2014 Google Summer of Code (GSoC) is coming up soon. The published timeline puts the mentoring organization applications from Feb 3 to 14. OBF participated on behalf of … Continue reading

Posted in BioDAS, BioJava, BioLib, BioMOBY, BioPerl, Biopython, BioRuby, Blipkit, Community, Google Summer of Code, OBDA / BioSQL, OBF, OBF Projects | 7 Comments

Biopython 1.63 released

Source distributions and Windows installers for Biopython 1.63 are now available from the downloads page on the official Biopython website and (soon) from the Python Package Index (PyPI). The current version removed the requirement of the 2to3 library. This was made possible by dropping Python 2.5 (and Jython 2.5). This … Continue reading

Posted in Biopython, Code, Community, Development, OBF Projects | Tagged , , , , , | 22 Comments