O|B|F News » Biopython http://news.open-bio.org/news Open Source Bioinformatics news Wed, 10 Mar 2010 22:45:54 +0000 http://backend.userland.com/rss092 en Sanger FASTQ format and the Solexa/Illumina variants http://news.open-bio.org/news/2009/12/nar-fastq-format/ Biopython 1.53 released http://news.open-bio.org/news/2009/12/biopython-release-153/ Interleaving paired FASTQ files with Biopython http://news.open-bio.org/news/2009/12/interleaving-paired-fastq-files-with-biopython/ Working with FASTQ files in Biopython when speed matters http://news.open-bio.org/news/2009/09/biopython-fast-fastq/ Biopython CVS to git migration git repository, hosted on github.com who kindly provide git hosting for open source projects free of charge. The BioRuby project have been using github for some time, so we are in good company.]]> http://news.open-bio.org/news/2009/09/biopython-cvs-to-git-migration/ Biopython 1.52 released http://news.open-bio.org/news/2009/09/biopython-release-152/ Simpler, optimized format conversion with Biopython convert() function that both Bio.SeqIO and Bio.AlignIO will get in Biopython 1.52. This allows easier file conversion, and internally provides a mechanism for specific optimisations, such as for FASTQ conversions.]]> http://news.open-bio.org/news/2009/09/biopython-convert-function/ Indexing sequence files with Biopython Biopython 1.52 will include a couple of nice improvements to the Bio.SeqIO module, and here we're going to introduce the new index function.]]> http://news.open-bio.org/news/2009/09/biopython-seqio-index/ Biopython 1.51 released http://news.open-bio.org/news/2009/08/biopython-1-51-released/ Biopython 1.51 beta released http://news.open-bio.org/news/2009/06/biopython-151-beta-released/