Archive for the ‘BioPython’ Category
Saturday, October 29th, 2005
We are pleased to announce the release of Biopython 1.41. Many improvements were made in Biopython during the eight months since the previous release, and the new release contains lots of bugfixes, improvements, new functionalities, and better documentation. To pick a few, there's the new Bio.MEME module by Jason Hackney, ...
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Thursday, February 24th, 2005
We are pleased to announce the release of Biopython 1.40 beta. It has
been nine months since the last official release (1.30), and there are numerous
changes, bugfixes, enhancements, goodies and new contributors. Most
notable are the addition of the Nexus parser (Frank Kauff w/ Cymon Cox), the CAPS module (Jonathan Taylor), ...
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Friday, May 14th, 2004
I'm happy to announce a new release of Biopython 1.30, available
today from http://biopython.org. This release contains a number of
new modules and substantial changes to older modules. As a result of
the changes, we've bumped up to a brand new major number. Please do
download, test with your code, and report any bugs ...
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Wednesday, February 18th, 2004
BioKnoppix is a new live CD linux, based on
KNOPPIX, with EMBOSS 2.8.0, jemboss, artemis, clustalx, Cn3D, ImageJ, BioPython, Rasmol, Bioperl, Bioconductor. It being made available by The University of Puerto Rico High Performance Computing facility (HPCf) and the Puerto Rico Biomedical Research Infrastructure Network (BRIN-PR). Great stuff!
Posted in BioPerl, BioPython, General | Comments Off
Tuesday, February 17th, 2004
I'm happy to announce the 1.24 release of Biopython. As normal Biopython is available from http://biopython.org.
The major changes in this release, in addition to the usual bug fixes, are:
New parsers for Phred and Ace format files -- thanks to Frank Kauff
New Code for dealing with NMR data -- thanks to ...
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Sunday, October 19th, 2003
Jeff announces a new release of Biopython:
Biopython 1.23 is now available from the website at:
http://www.biopython.org/
This is mostly a maintenance release, which fixes some problems in the
installation. You do not need to update from 1.22 unless you are using
the Bio.Cluster, Bio.KDTree, or Bio.PDB.mmCIF packages. The changes
made in this release ...
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Saturday, August 30th, 2003
Hi Everyone,
Apologies for the mass cross-posting but this email is about server and IP changes that will affect all of our projects and servers.
Simply put -- Wyeth, the company that provides us with our hosting and wonderful T3 connection to the internet is cutting their internet connection circuits over from ...
Posted in BioDAS, BioJava, BioMOBY, BioPerl, BioPython, General, OBDA / BioSQL | Comments Off
Sunday, July 27th, 2003
Available now at http://biopython.org/download/
Changes include:
added Andrew Dalke's EUtils library
added Michiel de Hoon's gene expression analysis package
updates to setup code, now smarter about dependencies
updates to test suite, now smarter about code that is imported
Michael Hoffman's fixes to DocSQL
syntax fixes in triemodule.c to compile on SGI, Python 2.1 compatible
updates in NCBIStandalone, short ...
Posted in BioPython, General | Comments Off
Thursday, June 12th, 2003
Do you need to access sequences from multiple places? Would you like
to easily retrieve your own local sequences from indexed flat files,
all other sequences on species X from department wide raletional
database and the rest from global internet servers?
The Open Biological Database Access (OBDA) System was designed so that
one could use ...
Posted in BioJava, BioPerl, BioPython, OBDA / BioSQL | No Comments »
Sunday, May 11th, 2003
The day you've been waiting for is finally here. That's right, it's time for a brand new biopython.org website! Woo. Thanks to the hard work of Chris Dagdigian and your Biopython team, we've got our new website set up on a new up to date Linux server. Come check out ...
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