Category Archives: BioRuby

O|B|F in Google Summer of Code

Posted on March 21, 2010 by Robert Buels

O|B|F is in Google Summer of Code, student applications due to Google April 9, 2010. Continue reading →

Posted in BioDAS, BioJava, BioLib, BioMOBY, BioPerl, Biopython, BioRuby, Blipkit, Community, Google Summer of Code, OBDA / BioSQL, OBF, OBF Projects | Tagged , , | Leave a comment

BioRuby 1.4.0 released

Posted on December 29, 2009 by Naohisa Goto

We are pleased to announce the release of BioRuby 1.4.0. This new release contains many new features, in addition to bug fixes and improvements. PhyloXML support: Support for reading and writing PhyloXML file format is added, developed by Diana Jaunzeikare, … Continue reading →

Posted in BioRuby, Code, Development, OBF, OBF Projects | Tagged , | Leave a comment

Sanger FASTQ format and the Solexa/Illumina variants

Posted on December 17, 2009 by Peter

I’m delighted to announce an open access publication in Nucleic Acids Research describing the FASTQ file format based on the conventions agreed by the OBF projects: The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ … Continue reading →

Posted in BioJava, BioPerl, Biopython, BioRuby, Blogroll, Community, Development, Documentation, General, OBF, OBF Projects | Tagged , , , , , | Leave a comment

BioRuby 1.3.1 released

Posted on September 2, 2009 by Naohisa Goto

We are pleased to announce the release of BioRuby 1.3.1. This new release fixes many bugs existed in 1.3.0. Here is a brief summary of changes. Refactoring of BioSQL support. Bio::PubMed bug fixes. Bio::NCBI::REST bug fixes. Bio::GCG::Msf bug fixes. Bio::Fasta::Report … Continue reading →

Posted in BioRuby, Code, Community, Development, OBF Projects | Tagged | Leave a comment

BioRuby 1.3.0 is released

Posted on February 25, 2009 by obfadmin

Hi all, We are pleased to announce the release of BioRuby 1.3.0. The archive is available at: http://bioruby.org/archive/bioruby-1.3.0.tar.gz Web page: http://bioruby.org/ http://bioruby.open-bio.org/ API documentation: http://bioruby.org/rdoc/ Bug report: http://rubyforge.org/projects/bioruby/ (Updating of http://bioruby.rubyforge.org/ is still in progress. Please wait for a moment.) … Continue reading →

Posted in BioRuby, Code, Development, Documentation | Tagged | Leave a comment