Category Archives: BioRuby

Travis-CI for Testing

BioRuby, Biopython and BioPerl are now using Travis-CI.org, a hosted continuous integration service for the open source community, to run their unit tests automatically whenever their GitHub repositories are updated. Continue reading

Posted in BioPerl, Biopython, BioRuby, Blogroll, Code, Community, Development, OBF, OBF Projects | Leave a comment

Students selected for GSoC

Hello all, I’m very pleased and excited to announce that the Open Bioinformatics Foundation has selected 5 very capable students to work on OBF projects this summer as part of the Google Summer of Code (GSoC) program. The accepted students, … Continue reading

Posted in BioLib, Biopython, BioRuby, Blogroll, Community, Development, Google Summer of Code, OBF, OBF Projects | Leave a comment

BioRuby 1.4.2 released

We are pleased to announce the release of BioRuby 1.4.2. This new release fixes bugs existed in 1.4.1 and adds new features and improvement of performance. Here is a brief summary of changes.

Posted in BioRuby, Code, Development, OBF, OBF Projects | Tagged , , , , , | 1 Comment

OBF and Google Summer of Code 2011

Google announced today the Open Bioinformatics Foundation (OBF) has been accepted as a mentoring organization for the 2011 Google Summer of Code! Continue reading

Posted in BioDAS, BioJava, BioLib, BioMOBY, BioPerl, Biopython, BioRuby, Blogroll, Code, Community, Development, Google Summer of Code, OBF, OBF Projects | Leave a comment

Introduction of OpenID logins for OBF wikis

Due to a huge influx of spam across all OBF wikis, we are in the process of locking down new user account creation and adding OpenID logins for the OBF wikis (BioPerl example). User account creation via the old login … Continue reading

Posted in BioDAS, BioJava, BioLib, BioMOBY, BioPerl, Biopython, BioRuby, Blipkit, Community, Documentation, OBDA / BioSQL, OBF, OBF Projects, Website | Leave a comment

OBF Redmine server now available

The OBF now has a sparkly new Redmine instance running on Amazon EC2,¬†thanks to efforts from Chris Dagdigian and Jason Stajich (with some admin help from yours truly). ¬†Bugs and user names (along with email contacts) from our old Bugzilla … Continue reading

Posted in BioDAS, BioJava, BioLib, BioMOBY, BioPerl, Biopython, BioRuby, Blipkit, Code, Community, Development, OBDA / BioSQL, OBF, OBF Projects | Leave a comment

BioRuby 1.4.1 released

We are pleased to announce the release of BioRuby 1.4.1. This new release fixes bugs existed in 1.4.0 and new features are added. Here is a brief summary of changes.

Posted in BioRuby, Code, Development, OBF, OBF Projects | 1 Comment