Category Archives: OBF

General Open Bioinformatics News

OBF applies for Google Summer of Code 2014

On Friday, OBF applied to be a mentoring organization for Google Summer of Code 2014. The core of our application to Google is our list of project ideas and our team of mentors supporting them. (We also have a separate … Continue reading

Posted in Code, Community, Development, Google Summer of Code, OBF | 8 Comments

Call for Ideas for OBF’s 2014 Google Summer of Code

Google Summer of Code is on again for 2014, and OBF is once again applying as a mentoring organization. Participating in GSoC as an organization is very competitive, and we will need your help in gathering a good set of … Continue reading

Posted in Code, Community, Development, Google Summer of Code, OBF | 7 Comments

Call for Organization Admins for OBF’s 2014 Google Summer of Code participation

Update: The deadline for responding has been extended to January 25. The 2014 Google Summer of Code (GSoC) is coming up soon. The published timeline puts the mentoring organization applications from Feb 3 to 14. OBF participated on behalf of … Continue reading

Posted in BioDAS, BioJava, BioLib, BioMOBY, BioPerl, Biopython, BioRuby, Blipkit, Community, Google Summer of Code, OBDA / BioSQL, OBF, OBF Projects | 7 Comments

BOSC 2014 Keynote Speakers

Thanks to those who participated in the BOSC 2014 Keynote Competition! Our winner is Manuel Corpas, who correctly surmised Philip Bourne: @OBF_BOSC #BOSC2014 it would make sense to have @pebourne as keynote, now that he is Director of Data Science … Continue reading

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BOSC 2014 Keynote Competition

We’re pleased to officially confirm that one of the two keynote speakers for the 15th annual Bioinformatics Open Source Conference (BOSC 2014, in Boston) will be C. Titus Brown, as he announced on Twitter recently – but can you guess the second keynote speaker? Continue reading

Posted in Blogroll, BOSC/ISMB, Community, General, Humor, OBF | Tagged , , , , , , | 10 Comments

Initial release of BioPerl Bio::Community distribution

Note: I’m reposting here the original announcement from Florent Angly on the BioPerl mail list. Dear all, Some time ago, I announced that I was working on a set of BioPerl modules collectively forming the Bio-Community distribution. These Moose-based modules provide objects to … Continue reading

Posted in OBF | 7 Comments

Biopython 1.63 beta released

Source distributions and Windows installers for Biopython 1.63 beta are now available from the downloads page on the official Biopython website. This is a beta release for testing purposes, the main reason for a beta version is the large amount of changes imposed by the … Continue reading

Posted in Biopython, Code, Community, Development, OBF, OBF Projects | Tagged , , , , , | 15 Comments

Biopython 1.62 released

Source distributions and Windows installers for Biopython 1.62 are now available from the downloads page on the official Biopython website and from the Python Package Index (PyPI). Continue reading

Posted in Biopython, BOSC/ISMB, Code, Community, Development, OBF, OBF Projects | Tagged , , , , , , , | 6 Comments

BOSC 2013

Hello from Berlin, where the pre-BOSC informal CodeFest 2013 meeting is already underway. We’re looking forward to seeing even more of you on Friday and Saturday for BOSC 2013. BOSC 2013 will be the 14th annual Bioinformatics Open Source Conference, … Continue reading

Posted in Blogroll, BOSC/ISMB, Community, OBF, OBF Projects | Tagged , | 2 Comments

BioRuby 1.4.3.0001 Released

We are pleased to announce the release of BioRuby 1.4.3.0001. This new release fixes the following bugs. “gem install bio” failed with Ruby 2.0 or later versions. lib/bio/db/gff.rb script encoding issue Bio::Blast::Default::Report parse error when subject sequence contains spaces. For … Continue reading

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