Tag Archives: BioJava

BioJava 3.0.4 released

BioJava 3.0.4 has been released and is available from http://www.biojava.org/wiki/BioJava:Download as well as from the BioJava maven repository at http://www.biojava.org/download/maven/ . – This is mainly a bug fix release addressing issues with the protein structure and disorder modules – One … Continue reading

Posted in BioJava, Development | Tagged | Leave a comment

Sanger FASTQ format and the Solexa/Illumina variants

I’m delighted to announce an open access publication in Nucleic Acids Research describing the FASTQ file format based on the conventions agreed by the OBF projects: The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ … Continue reading

Posted in BioJava, BioPerl, Biopython, BioRuby, Blogroll, Community, Development, Documentation, General, OBF, OBF Projects | Tagged , , , , , | Leave a comment

‘biojava in anger’ translated to French and Japanese

Continue reading

Posted in BioJava | Tagged | Comments Off

Montreal BioJava Bootcamp Announced

Continue reading

Posted in BioJava | Tagged | Comments Off

BioJava 1.3 Released

Highlights of this release include:

– Packed storage of sequence data in memory

– Better support for the OBDA database access standards

– Improvements to the parsers for output from tools like
blast and fasta.

– Many enhancements to the FeatureFilter system.
Continue reading

Posted in BioJava | Tagged | Comments Off

40+ biojava tutorials available

Continue reading

Posted in BioJava | Tagged | Comments Off