Author Archives: Chris Fields

BioPerl at GMOD Meeting 2010

BioPerl developers and users attended the BioPerl satellite meeting on January 13th, just prior to the GMOD Meeting.  Several items were covered on the agenda: In order to start addressing whole genome data with more lightweight objects, we are planning on … Continue reading

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BioPerl interview in latest FLOSS Weekly

Two of the core BioPerl developers, Jason Stajich and Chris Fields, were interviewed by FLOSS Weekly.  The interview is now available as an MP3 on the FLOSS Weekly website; several streaming versions (including podcast) are also available.

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BioPerl core 1.6.1 PPM available

BioPerl 1.6.1 is now available for ActivePerl as a PPM, instructions for downloading can be found on the BioPerl wiki. This has been tested only for ActivePerl 5.10 and above, so any feedback with older versions of BioPerl would be … Continue reading

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First 1.6.1 alphas of BioPerl-Run, BioPerl-DB, BioPerl-Network

Running a bit late on this, so just a quick note that the first alphas for BioPerl-Run, BioPerl-DB, and BioPerl-Network have been uploaded to CPAN: BioPerl-Run BioPerl-DB BioPerl-Network They can also be downloaded from the BioPerl website: http://bioperl.org/DIST/RC/ This is … Continue reading

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BioPerl 1.6.1 released

We are pleased to announce the immediate availability of BioPerl 1.6.1, the latest release of BioPerl’s core code. You can grab it here: Via CPAN: http://search.cpan.org/~cjfields/BioPerl-1.6.1/ Via the BioPerl website: http://bioperl.org/DIST/BioPerl-1.6.1.tar.bz2 http://bioperl.org/DIST/BioPerl-1.6.1.tar.gz http://bioperl.org/DIST/BioPerl-1.6.1.zip The PPM for Windows should also finally … Continue reading

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Release 1.6 of BioPerl-run, BioPerl-db, BioPerl-network

All, I am proud to announce that the 1.6 release for BioPerl-run, BioPerl- db, and BioPerl-network are now available by direct download and via CPAN. These are designated as 1.006000, with a requirement for BioPerl 1.6 and higher (1.006000). FIXED: … Continue reading

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Next BioPerl Release

We are currently planning a timetable for the next few Bioperl releases, including the next developer release (v1.5.2), the next stable release (1.6) and beyond. Users are welcome to add requests (within reason!), donate code, etc. Lots of changes in … Continue reading

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ListSummaries for April 26-May 9

ListSummaries for April 26-May 9 are up at the usual place: http://www.bioperl.org/wiki/Mailing_list_summaries Direct link: http://www.bioperl.org/wiki/ListSummary:April_26-May_9%2C2006 It’s a bit of a hurried one so don’t be surprised to find a few spelling errors here and there. I’m getting ready for a … Continue reading

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Bioperl ListSummaries for April 12-25

The newest summary of the BioPerl mailing lists has been posted to the wiki: April 12-25 Post gripes, harrassments, and faint praises at the regular places.

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BioPerl Mailing List Summaries

The first of a biweekly summary of BioPerl mailing list summaries has been posted to the wiki: April 1-11 These will likely be archived on the wiki but may be moved to a more suitable location in the future (maybe … Continue reading

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