Author Archives: Chris Dagdigian

BioJava 1.3 Released

Highlights of this release include:

– Packed storage of sequence data in memory

– Better support for the OBDA database access standards

– Improvements to the parsers for output from tools like
blast and fasta.

– Many enhancements to the FeatureFilter system.
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Chromatogram viewing with Java

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BioJava tutorial updated

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bioperl-run 1.2.0 released

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Avantgo-friendly channel for bioperl list

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AGP-bases DAS reference server available

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parser for ab initio gene predictor GlimmerM in CVS

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BioSQL and Bioperl-db inching towards release

I got the Oracle version of the biosql schema fully migrated, at least as far as I can tell from here. I’m going to commit the new version some time today. There will also be a sql*plus migration script from pre-Singapore to the current version that supposedly keeps your data intact (be sure to read the disclaimer though).
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new tab sequence format

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Windows PPM for bioperl-1.2.1 available

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