Author Archives: mdehoon

Biopython release 1.47

Biopython 1.47 includes a new Bio.AlignIO module, updates to Bio.Blast, parsers for NCBI’s Entrez E-Utilities, numerous other code improvements and fixes, and an extended and updated documentation. In particular if you use Biopython to access NCBI’s E-Utilities, we encourage you to download and install this release to ensure full compliance with NCBI’s access rules. Continue reading

Posted in Biopython | Tagged | Comments Off on Biopython release 1.47

Biopython release 1.45

Biopython 1.45 includes numerous code improvements and fixes, including in Bio.Seq, Bio.SeqIO, Bio.Entrez, Bio.PopGen, Bio.SwissProt, Bio.Cluster, Bio.SCOP, Bio.InterPro, Bio.GenBank, Bio.ExPASy, BioSQL, and the Biopython documentation. Too many to list them all here! Continue reading

Posted in Biopython | Tagged | Comments Off on Biopython release 1.45

Biopython release 1.44

Biopython 1.44 includes lots of code improvements and fixes in the Blast interface and parsers, sequence input/output, the SwissProt parser, the clustering routines, as well as a brand new module for population genetics. For reasons of compatibility, some radical changes were necessary in some parts of the code; please let us know if you find some functionality missing. Continue reading

Posted in Biopython | Tagged | Comments Off on Biopython release 1.44

Biopython release 1.43

Biopython 1.43 includes a brand-new set of parsers in Bio.SeqIO for reading biological sequence files in various formats, an updated Blast XML parser in Bio.Blast.NCBIXML, a new UniGene flat-file parser, and numerous improvements and bug fixes in Bio.PDB, Bio.SwissProt, Bio.Nexus, BioSQL, and others. Believe it or not, even the documentation was updated. Continue reading

Posted in Biopython | Tagged | Comments Off on Biopython release 1.43

Biopython release 1.42

Biopython 1.42 includes a brand-new Genbank parser in Bio.GenBank, numerous updates to Bio.Nexus and to Bio.Geo, lots of bug fixes by scores of contributors through BugZilla, and Bio.Cluster became object-oriented. Continue reading

Posted in Biopython | Tagged | Comments Off on Biopython release 1.42

Biopython release 1.41

We are pleased to announce the release of Biopython 1.41. Many improvements were made in Biopython during the eight months since the previous release, and the new release contains lots of bugfixes, improvements, new functionalities, and better documentation. To pick … Continue reading

Posted in Biopython, OBF Projects | Tagged | Comments Off on Biopython release 1.41