Category Archives: Blogroll

Biopython 1.72 released

Dear Biopythoneers, I’m writing this in Portland at the GCC BOSC 2018 conference, where I will present the Biopython Project Update 2018 talk tomorrow. Yesterday during my airport layover in Iceland, I published the Biopython 1.72 release to our website … Continue reading

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Saving science from itself: A review of the 2018 eLife Innovation Sprint

This is a guest blog post from Anisha Keshavan, who was supported by the ongoing Open Bioinformatics Foundation travel fellowship program to attend the 2018 eLife Innovation Sprint in Cambridge, May 2018. The OBF’s Travel Fellowship program continues to help … Continue reading

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BioJava 5.0.0 is out

BioJava 5.0.0 was released on the 23rd of March 2018. This represents a major milestone that brings more consolidation and reorganisation of modules. This is the first release to be based on Java 8, bring in your lambdas and stream … Continue reading

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Biopython 1.71 released

Dear Biopythoneers, Source distributions of Biopython 1.71 are now available from the downloads page on the official Biopython website, and the release is also on the Python Package Index (PyPI) including pre-compiled Wheel Packages for Linux, Mac OS X and Windows. This … Continue reading

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GCCBOSC 2018: A Bioinformatics Community Conference – Call for Abstracts

We are pleased to announce that abstract submission and early registration for GCCBOSC2018 are now open. This event brings our annual Bioinformatics Open Source Conference and the Galaxy Community Conference together into a unified week-long event. If you work in open source life science or … Continue reading

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OBF Travel Fellowship – Coding in the Winter Wonderland: Galaxy Admin Training in Oslo, 2018

Sharing highlights of my unforgettable experience in the snowy white city of Oslo, Norway from the 7th to the 14th of January, 2018. I submitted a last-minute application for the Galaxy Admin workshop in the University of Oslo so I was extremely delighted when Dr. Nygard dropped me a message confirming my place for the training.… Continue reading Coding in the Winter Wonderland: Galaxy Admin Training in Oslo, 2018

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Mailing list consolidation

The OBF’s self-hosted mailman server is still struggling right now, so we are looking at migrating the active mailing lists to paid hosting, and as part of this consolidating down to ideally about a dozen mailing lists. Currently we have a … Continue reading

Posted in BioDAS, BioJava, BioLib, BioMOBY, BioPerl, Biopython, BioRuby, Blogroll, Community, Development, Essays, Mailing lists, OBDA / BioSQL, OBF, OBF Projects, Website | Leave a comment

This is a guest blog post from Farah Zaib Khan, who was supported by the ongoing Open Bioinformatics Foundation travel fellowship program to attend our annual conference BOSC 2017 and its preceding Codefest in Prague, July 2017. The OBF’s Travel Fellowship program continues to … Continue reading

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Mailing list outage, and public board meeting update

This time of year we’d normally be having a public board meeting as part of our commitment to communication with our member projects and the wider OBF community. As per our bylaws we notify the community at least 10 days … Continue reading

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Biopython on Podcast.__init__

Podcast.__init__ describes itself as “The Podcast About Python and the People Who Make It Great”, and the most recent episode is “Biopython with Peter Cock, Wibowo Arindrarto, and Tiago Antão (Episode 125)“. Listening to the finished podcast, interviewer Tobias Macey … Continue reading

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